Structure-activity relationships of pyrethroid insecticides. Part 2. The use of molecular dynamics for conformation searching and average parameter calculation

Summary Molecular dynamics simulations have been performed on a number of conformationally flexible pyrethroid insecticides. The results indicate that molecular dynamics is a suitable tool for conformational searching of small molecules given suitable simulation parameters. The structures derived from the simulations are compared with the static conformation used in a previous study. Various physicochemical parameters have been calculated for a set of conformations selected from the simulations using multivariate analysis. The averaged values of the parameters over the selected set (and the factors derived from them) are compared with the single conformation values used in the previous study.     

The vibrational spectra of some 1,3-dimethyl-1,3-diaza-2-boracyclopentanes

A detailed vibrational assignment is proposed for 1,3-dimethyl-1,3-diaza-2-boracyclopentanes:

where X = Cl, Br or NMe₂. The assignments are generally in accord with C_2v symmetry, but there is some evidence for a slight breakdown, as some A₂ modes appear in the IR. The BN₂ stretches are near 1500 cm^?1, (antisymmetric) and 1300 cm^?1 (symmetric), consistent with a large degree of π-bonding.     

Deuterium exchange of 4-pyrimidones and 4-pyrimidthiones

The hydrogen-deuterium exchange of H-2 in 4-pyrimidone, a number of 1- and 3-alkyl-4-pyrimidones and several of their thione analogs in deuterium oxide at moderate temperatures is reported. This reaction is apparently not susceptible to acid or base catalysis. Cations of the 4-pyrimidones were found not to exchange H-2 at all in acid media. Catalytic amounts of bases do not alter the exchange rates whereas more concentrated alkali decompose the pyrimidone. However, 1,4(3,4)-dihydro-1,3-dimethyl-4-oxopyrimidinium iodide (and its 6-methyl analog) exchange H-2 quite rapidly in neutral deuterium oxide, almost instantly when triethylamine is added as a catalyst, and very slowly in dilute solutions of deuterium chloride in deuterium oxide. Mechanisms are proposed to account for these phenomena.     

Lars Onsager (1903–1976), Chemist-Physicist, on the Silver Anniversary of His Death

The Norwegian-born theoretical chemist-physicist Lars Onsager (1903–1976) received the 1968 Nobel Prize for Chemistry for the discovery of the reciprocal relations bearing his name, which are fundamental for the thermodynamics of irreversible processes. A recipient of numerous awards and honorary degrees, which he did not receive until relatively late in life, he taught at the Johns Hopkins and Brown universities, but spent most of his academic career at Yale University (1933–1972). He spent his post-retirement years (1972–1976) as Distinguished University Professor at the University of Miamis Center for Theoretical Studies, where he continued his work with several postdoctoral research fellows.     

Soft-laser scanning densitometry performed on a 35-mm slide illustrating SDS-PAGE separation of adenovirion polypeptides

Virion polypeptides (35 S), methionine-labeled and purified by CsCl gradient centrifugation, were separated by SDS-gel electrophoresis. Analysis of their band pattern was performed by scanning the images of the SDS-gels shown on a 35-mm slide. The densitometric tracings revealed the presence of 17 protein bands, although only 15 of them were visible to the naked eye. The high sensitivity and resolving capacities of the soft-laser scanning densitometer enabled us to detect trace amounts of protein bands separated in SDS-gels and to obtain a resolution compatible to that of electrophoresis. Fourfold electronic amplification of the densitometric tracings, produced by a computer, generated new information regarding the pattern of the electrophoregram. The facility to amplify peaks of importance is particularly advantageous when faint or overlapping protein bands revealed on a gel are assessed.     

Photochemical and thermal transformations of azomethine imines

The thermal and photochemical fragmentations of a few bisazoalkenes have been investigated. 2-Phenyl-4,5-disubstituted-1, 2,3-triazoles were obtained both in the thermolysis and photolysis of 1, 2-bisphenylazo-(4, 4′-dichloro) stilbene, 1, 2-bisphenylazo(4, 4′-dimethoxy)stilbene, 1, 2-bisphenylazocyclohexene and o-(phenylazo) phenyldiazocyanide. Both 2, 3-bisphenylazo-2-butene and 1, 2-bisphenylazoethylene failed to undergo either photolysis or thermolysis in the expected manner. However, 2, 3-bisphenylazo-2-butene underwent an acid-catalysed valence isomerisation to anhydro 1-phenylimino-2-phenyl-4, 5-dimethyl-1, 2, 3-trizolium hydroxide, which on photolysis gave 2-phenyl-4, 5-dimethyl-1, 2, 3-triazole. The same iminotriazolium intermediate gave a cycloadduct, 2, 6-diphenyl-3, 3a-dimethyl-4, 5-dicarbomethoxypyrazolino [2.3.c][1.2.3] triazole, on treatment with dimethyl acetylenedicarboxylate, whereas treatment with carbon disulphide gave 2-phenyl-4, 5-dimethyl-1, 2, 3-triazole. Both photolysis and thermolysis of C-biphenylene-N^α(4-chlorophenyl)-N^β-cyanoazomethine imine gave 9-fluorenone-N- (4-chlorophenyl) anil. Photolysis of 1, 2-bisphenylazoacenaphthylene in methanol gave acenaphthenequinone monophenylhydrazone.     

A hierarchical family of three-dimensional potential energy surfaces for He-CO

A hierarchical family of five three-dimensional potential energy surfaces has been developed for the benchmark He-CO system. Four surfaces were obtained at the coupled cluster singles and doubles level of theory with a perturbational estimate of triple excitations, CCSD(T), and range in quality from the doubly augmented double-zeta basis set to the complete basis set (CBS) limit. The fifth corresponds to an approximate CCSDT/CBS surface (CCSD with iterative triples/CBS, denoted CBS+corr). The CBS limit results were obtained by pointwise basis set extrapolations of the individual counterpoise-corrected interaction energies. For each surface, over 1000 interaction energies were accurately interpolated using a reproducing kernel Hilbert space approach with an R-6+R-7 asymptotic form. In each case, both three-dimensional and effective two-dimensional surfaces were developed. In standard Jacobi coordinates, the final CBS+corr surface has a global minimum at rCO=2.1322a0,R=6.418a0, and gamma=70.84 degrees with a well depth of -22.34 cm-1. The other four surfaces have well depths ranging from -14.83 cm-1 [CCSD(T)/d-aug-cc-pVDZ] to -22.02 cm-1 [CCSD(T)/CBS]. For each of these surfaces the infrared spectrum has been accurately calculated and compared to experiment, as well as to previous theoretical and empirical surfaces. The final CBS+corr surface exhibits root-mean-square and maximum errors compared to experiment (4He) of just 0.03 and 0.04 cm-1, respectively, for all 42 transitions and is the most accurate ab initio surface to date for this system. Other quantities investigated include the interaction second virial coefficient, the integral cross sections, and thermal rate coefficients for rotational relaxation of CO by He, and rate coefficients for CO vibrational relaxation by He. All the observable quantities showed a smooth convergence with respect to the quality of the underlying interaction surface.     

Plane partitions IV: A conjecture of Mills—Robbins—Rumsey

In this paper we consider a problem posed by W Mills D Robbins and H Rumsey for a certain plane partition generating functionZ _n (x, m) The special caseZ _n (1,m) is the generating function that arose in the weak Macdonald conjecture Mills—Robbins—Rumsey conjectured thatZ _n (2,m) also possesses a nice finite product representation Their conjecture is proved as Theorem 1 The method of proof resembles that of the evaluation ofZ _n (1,m) given previously Many results for the₃ F ₂ hypergeometric function are required including Whipple's theorem, the Pfaff-Saalschutz summation and contiguous relations In passing we note that our Lemma 2 provides a new and simpler representation ofZ _n (2,m) as a determinant $$Z_n (2,m) = \det \left( {\delta _{ij} + \sum\limits_{i = 0}^l {\left( {\begin{array}{*{20}c} {m + j + t} \\ t \\ \end{array} } \right)\left( {\begin{array}{*{20}c} {m + i} \\ {m + t} \\ \end{array} } \right)} } \right)_{0 \leqq ij \leqq n - 1} $$ Conceivably this new representation may provide new interpretations of the combinatorial significance ofZ _n (2,m) In the final analysis, one would like a combinatorial explanation ofZ _n (2,m) that would provide an algorithmic proof of the Mills Robbins—Rumsey conjecture